I don't understand what you mean by the files you have made.
If you have made a stock and purchase class, then you create new instances of these classes (probably in a new class with a main method). Then you call the methods on these classes as you need.
For instance, you have a stock class that has an *** method.
Stock st = new Stock();
stock.add( %26lt;parameters%26gt; );
Similarly with the purchase class, create an instance of the class and call the methods on it.
If you are talking about inputting a text file you could use a Scanner and the file name as the parameter to the scanner.
The Scanner API:
http://java.sun.com/javase/6/docs/api/ja鈥?/a>
To output a file, you need to use output streams, etc.
I answered a previous question on output of files, check it out here (options 2 and 3):
http://answers.yahoo.com/question/index;鈥?/a>
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